This patch changes the name the command-line options related to debug
output to all start with "debug" rather than being a mix of that and
"trace". It also makes it clear that the breakpoint time is specified
in ticks and not in cycles.
At the same time, rename the trace flags to debug flags since they
have broader usage than simply tracing. This means that
--trace-flags is now --debug-flags and --trace-help is now --debug-help
